CRAN Package Check Results for Package BoolNet

Last updated on 2024-06-19 22:54:36 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.9 23.40 94.99 118.39 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.9 17.85 69.70 87.55 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.9 147.46 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.9 159.16 NOTE
r-devel-windows-x86_64 2.1.9 25.00 114.00 139.00 NOTE
r-patched-linux-x86_64 2.1.9 26.28 88.61 114.89 NOTE
r-release-linux-x86_64 2.1.9 24.31 91.04 115.35 NOTE
r-release-macos-arm64 2.1.9 51.00 NOTE
r-release-macos-x86_64 2.1.9 74.00 NOTE
r-release-windows-x86_64 2.1.9 24.00 80.00 104.00 FAIL
r-oldrel-macos-arm64 2.1.9 48.00 OK
r-oldrel-macos-x86_64 2.1.9 183.00 OK
r-oldrel-windows-x86_64 2.1.9 28.00 124.00 152.00 OK

Check Details

Version: 2.1.9
Check: Rd files
Result: NOTE checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup? 23 | Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state. | ^ checkRd: (-1) plotSequence.Rd:42: Lost braces; missing escapes or markup? 42 | Specifies whether the actual attractor states are included in the plot or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) sequenceToLaTeX.Rd:37: Lost braces; missing escapes or markup? 37 | Specifies whether the actual attractor states are included in the table or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup? 131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies. | ^ checkRd: (-1) testNetworkProperties.Rd:140: Lost braces 140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 2.1.9
Check: PDF version of manual
Result: WARN LaTeX errors when creating PDF version. This typically indicates Rd problems. Flavor: r-release-windows-x86_64

Version: 2.1.9
Check: PDF version of manual without index
Result: ERROR Re-running with no redirection of stdout/stderr. Flavor: r-release-windows-x86_64

Version: 2.1.9
Check: HTML version of manual
Result: FAIL
Flavor: r-release-windows-x86_64