CRAN Package Check Results for Package spacetime

Last updated on 2021-01-25 19:47:26 CET.

Check Details

Version: 1.2-3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘stgvis.Rmd’ using knitr
    Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
    
    Welcome to googleVis version 0.6.9
    
    Please read Google's Terms of Use
    before you start using the package:
    https://developers.google.com/terms/
    
    Note, the plot method of googleVis will by default use
    the standard browser to display its output.
    
    See the googleVis package vignettes for more details,
    or visit https://github.com/mages/googleVis.
    
    To suppress this message use:
    suppressPackageStartupMessages(library(googleVis))
    
    --- finished re-building ‘stgvis.Rmd’
    
    --- re-building ‘jss816.Rnw’ using Sweave
    Loading required package: zoo
    
    Attaching package: 'zoo'
    
    The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    Checking rgeos availability: TRUE
    rgdal: version: 1.5-19, (SVN revision 1092)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
    Path to GDAL shared files: /usr/share/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: /home/hornik/.local/share/proj:/usr/share/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
    Warning in proj4string(m) :
     CRS object has comment, which is lost in output
    Warning in proj4string(data@sp) :
     CRS object has comment, which is lost in output
    Warning in proj4string(newdata@sp) :
     CRS object has comment, which is lost in output
    Warning in krigeST(values ~ 1, wind.data, pred.grd, v) :
     The spatio-temporal variogram model does not carry the strongly recommended attribute 'temporal unit'.
     The unit 'secs' has been assumed. krigeST could not check whether the temporal distances between locations and in the variogram coincide.
    Loading required package: ade4
    Loading required package: adehabitatMA
    Loading required package: CircStats
    Loading required package: MASS
    Loading required package: boot
    
    Attaching package: 'boot'
    
    The following object is masked from 'package:lattice':
    
     melanoma
    
    
    Attaching package: 'adehabitatLT'
    
    The following object is masked from 'package:zoo':
    
     is.regular
    
    Loading required package: plyr
    
    Attaching package: 'plyr'
    
    The following object is masked from 'package:adehabitatLT':
    
     id
    
    The following object is masked from 'package:adehabitatMA':
    
     join
    
    The following object is masked from 'package:maps':
    
     ozone
    
    Warning: readShapePoly is deprecated; use rgdal::readOGR or sf::st_read
    Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
     Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
    Warning in proj4string(cs) :
     CRS object has comment, which is lost in output
    Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
     Discarded datum Unknown based on WGS84 ellipsoid in CRS definition
    Error: processing vignette 'jss816.Rnw' failed with diagnostics:
    Running ‘texi2dvi’ on ‘jss816.tex’ failed.
    LaTeX errors:
    ! Undefined control sequence.
    \hyper@linkurl ...tionraw >>}\relax \Hy@colorlink
     \@urlcolor #1\Hy@xspace@en...
    l.83 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.83 \begin{document}
    
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.83 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.83 \begin{document}
    
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.83 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.83 \begin{document}
    
    --- failed re-building 'jss816.Rnw'
    
    --- re-building ‘sto.Rnw’ using Sweave
    Warning in wkt(obj) : CRS object has no comment
    
    Attaching package: ‘zoo’
    
    The following objects are masked from ‘package:base’:
    
     as.Date, as.Date.numeric
    
    --- finished re-building ‘sto.Rnw’
    
    --- re-building ‘stpg.Rnw’ using Sweave
    Warning: undefined slot classes in definition of "ST_PG": con(class "PostgreSQLConnection")
    --- finished re-building ‘stpg.Rnw’
    
    --- re-building ‘stsubs.Rnw’ using Sweave
    Loading required package: zoo
    
    Attaching package: ‘zoo’
    
    The following objects are masked from ‘package:base’:
    
     as.Date, as.Date.numeric
    
    --- finished re-building ‘stsubs.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘jss816.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64