APIS: Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Parentage assignment package. Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion. The main functions of this package are the function APIS_2n(), APIS_3n and launch_APIShiny(), which perform parentage assignment.

Version: 2.0.4
Depends: R (≥ 3.5.0), shinyBS
Imports: cowplot, data.table, doParallel, dplyr, DT, foreach, ggplot2, gridExtra, htmltools, methods, plotly, rlang, shiny, shinythemes
Published: 2023-11-30
Author: Julien Roche [aut, cre], Ronan Griot [aut], Mathieu Besson [aut], Fran├žois Allal [aut], Marc Vandeputte [aut], Jonathan D'Ambrosio [aut], Romain Morvezin [aut], Florence Phocas [aut], Sophie Brard-Fudulea [aut], Pierrick Haffray [aut]
Maintainer: Julien Roche <jjm.roche at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: yes
CRAN checks: APIS results

Documentation:

Reference manual: APIS.pdf

Downloads:

Package source: APIS_2.0.4.tar.gz
Windows binaries: r-devel: APIS_2.0.3.zip, r-release: APIS_2.0.3.zip, r-oldrel: APIS_2.0.3.zip
macOS binaries: r-release (arm64): APIS_2.0.4.tgz, r-oldrel (arm64): APIS_2.0.4.tgz, r-release (x86_64): APIS_2.0.3.tgz, r-oldrel (x86_64): APIS_2.0.2.tgz
Old sources: APIS archive

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