INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <doi:10.1186/s13073-016-0319-7>.

Version: 1.5
Imports: missMDA
Published: 2016-12-09
DOI: 10.32614/CRAN.package.INSPIRE
Author: Safiye Celik
Maintainer: Safiye Celik <safiye at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: INSPIRE results


Reference manual: INSPIRE.pdf


Package source: INSPIRE_1.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): INSPIRE_1.5.tgz, r-oldrel (arm64): INSPIRE_1.5.tgz, r-release (x86_64): INSPIRE_1.5.tgz, r-oldrel (x86_64): INSPIRE_1.5.tgz
Old sources: INSPIRE archive


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