IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Suggests: knitr, markdown
Published: 2020-09-01
Author: Matthew Jackson [aut, cre, cph]
Maintainer: Matthew Jackson <mattjackson4 at gmail.com>
License: GPL-3
URL: https://doi.org/10.1101/2020.08.19.257501
NeedsCompilation: no
Citation: IgAScores citation info
Materials: README NEWS
CRAN checks: IgAScores results

Documentation:

Reference manual: IgAScores.pdf
Vignettes: The IgAScores Package

Downloads:

Package source: IgAScores_0.1.2.tar.gz
Windows binaries: r-devel: IgAScores_0.1.2.zip, r-release: IgAScores_0.1.2.zip, r-oldrel: IgAScores_0.1.2.zip
macOS binaries: r-release (arm64): IgAScores_0.1.2.tgz, r-release (x86_64): IgAScores_0.1.2.tgz, r-oldrel: IgAScores_0.1.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=IgAScores to link to this page.