JBrowseR: An R Interface to the JBrowse 2 Genome Browser

Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.

Version: 0.9.0
Imports: htmltools, htmlwidgets, reactR, stringr, magrittr, readr, jsonlite, httpuv, mime, cli, ids, dplyr
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2021-10-17
Author: Elliot Hershberg ORCID iD [aut, cre], the JBrowse 2 Team [aut]
Maintainer: Elliot Hershberg <eahershberg at gmail.com>
License: Apache License (≥ 2)
URL: https://gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR
NeedsCompilation: no
Materials: README NEWS
CRAN checks: JBrowseR results

Documentation:

Reference manual: JBrowseR.pdf
Vignettes: Introduction to JBrowseR
Creating URLs
Custom browser tutorial
Advanced JSON tutorial

Downloads:

Package source: JBrowseR_0.9.0.tar.gz
Windows binaries: r-devel: JBrowseR_0.9.0.zip, r-release: JBrowseR_0.9.0.zip, r-oldrel: JBrowseR_0.8.1.zip
macOS binaries: r-release (arm64): JBrowseR_0.8.1.tgz, r-release (x86_64): JBrowseR_0.9.0.tgz, r-oldrel: JBrowseR_0.9.0.tgz
Old sources: JBrowseR archive

Linking:

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