SOMbrero: SOM Bound to Realize Euclidean and Relational Outputs

The stochastic (also called on-line) version of the Self-Organising Map (SOM) algorithm is provided. Different versions of the algorithm are implemented, for numeric and relational data and for contingency tables as described, respectively, in Kohonen (2001) <isbn:3-540-67921-9>, Olteanu & Villa-Vialaneix (2005) <doi:10.1016/j.neucom.2013.11.047> and Cottrell et al (2004) <doi:10.1016/j.neunet.2004.07.010>. The package also contains many plotting features (to help the user interpret the results) and a graphical user interface based on 'shiny'.

Version: 1.3-1
Depends: R (≥ 3.5.0), igraph (≥ 1.0), markdown
Imports: scatterplot3d, shiny, grDevices, graphics, stats, ggplot2, ggwordcloud, metR, interp
Suggests: testthat, rmarkdown, knitr, hexbin, shinycssloaders, shinyBS, shinyjs, shinyjqui
Published: 2020-08-11
Author: Nathalie Vialaneix [aut, cre], Elise Maigne [aut], Jerome Mariette [aut], Madalina Olteanu [aut], Fabrice Rossi [aut], Laura Bendhaiba [ctb], Julien Boelaert [ctb]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix at inrae.fr>
BugReports: https://github.com/tuxette/sombrero/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: SOMbrero citation info
Materials: NEWS
CRAN checks: SOMbrero results

Documentation:

Reference manual: SOMbrero.pdf
Vignettes: SOMbrero package
A basic vignette on grids in SOMbrero
SOM for numeric data
SOM for contingency tables
SOM for dissimilarity data

Downloads:

Package source: SOMbrero_1.3-1.tar.gz
Windows binaries: r-devel: SOMbrero_1.3-1.zip, r-release: SOMbrero_1.3-1.zip, r-oldrel: SOMbrero_1.3-1.zip
macOS binaries: r-release (arm64): SOMbrero_1.3-1.tgz, r-release (x86_64): SOMbrero_1.3-1.tgz, r-oldrel: SOMbrero_1.3-1.tgz
Old sources: SOMbrero archive

Reverse dependencies:

Reverse imports: GenomicMating, miRSM

Linking:

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