babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format

Genomic analysis of model organisms often requires the use of databases based on human data or making comparisons to patient-derived resources. This requires converting genes between human and non-human analogues. The babelgene R package provides predicted gene orthologs/homologs for frequently studied model organisms in an R-friendly tidy/long format. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).

Version: 21.4
Depends: R (≥ 3.3)
Imports: dplyr, methods, rlang
Suggests: covr, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2021-04-26
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports: https://github.com/igordot/babelgene/issues
License: MIT + file LICENSE
URL: https://igordot.github.io/babelgene/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: babelgene results

Documentation:

Reference manual: babelgene.pdf
Vignettes: Introduction to babelgene

Downloads:

Package source: babelgene_21.4.tar.gz
Windows binaries: r-devel: babelgene_21.4.zip, r-release: babelgene_21.4.zip, r-oldrel: babelgene_21.4.zip
macOS binaries: r-release (arm64): babelgene_21.4.tgz, r-release (x86_64): babelgene_21.4.tgz, r-oldrel: babelgene_21.4.tgz

Reverse dependencies:

Reverse imports: msigdbr

Linking:

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