func2vis: Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.

Version: 1.0-3
Depends: ggplot2, igraph, devtools, ggrepel, grDevices, randomcoloR, R (≥ 4.0)
Published: 2023-03-16
DOI: 10.32614/CRAN.package.func2vis
Author: Raghvendra Mall [aut, cre]
Maintainer: Raghvendra Mall <raghvendra5688 at>
License: GPL (≥ 3)
NeedsCompilation: yes
In views: Omics
CRAN checks: func2vis results


Reference manual: func2vis.pdf


Package source: func2vis_1.0-3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): func2vis_1.0-3.tgz, r-oldrel (arm64): func2vis_1.0-3.tgz, r-release (x86_64): func2vis_1.0-3.tgz, r-oldrel (x86_64): func2vis_1.0-3.tgz
Old sources: func2vis archive


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