ggmotif: Extract and Visualize Motif Information from MEME Software

Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.

Version: 0.2.1
Depends: R (≥ 3.5.0)
Imports: tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, patchwork, ggseqlogo, memes, universalmotif, treeio, cowplot, ggsci, data.table
Suggests: knitr, rmarkdown
Published: 2022-08-11
Author: Xiang LI
Maintainer: Xiang LI <lixiang117423 at>
License: Artistic-2.0
NeedsCompilation: no
CRAN checks: ggmotif results


Reference manual: ggmotif.pdf
Vignettes: ggmotif


Package source: ggmotif_0.2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ggmotif_0.2.1.tgz, r-oldrel (arm64): ggmotif_0.1.4.tgz, r-release (x86_64): ggmotif_0.2.1.tgz, r-oldrel (x86_64): ggmotif_0.1.4.tgz
Old sources: ggmotif archive


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