haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

Haplotype and covariate relative risks in case-control data are estimated by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights. French et al. (2006) <doi:10.1002/gepi.20161>.

Version: 1.3.2
Depends: R (≥ 2.13.0), haplo.stats, survival
Published: 2022-04-28
DOI: 10.32614/CRAN.package.haplo.ccs
Author: Benjamin French[aut, cre], Thomas Lumley[aut, cre], Shawn Garbett[ctb]
Maintainer: Benjamin French <b.french at vumc.org>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/vubiostat/haplo.ccs
NeedsCompilation: no
Materials: README
CRAN checks: haplo.ccs results


Reference manual: haplo.ccs.pdf


Package source: haplo.ccs_1.3.2.tar.gz
Windows binaries: r-devel: haplo.ccs_1.3.2.zip, r-release: haplo.ccs_1.3.2.zip, r-oldrel: haplo.ccs_1.3.2.zip
macOS binaries: r-release (arm64): haplo.ccs_1.3.2.tgz, r-oldrel (arm64): haplo.ccs_1.3.2.tgz, r-release (x86_64): haplo.ccs_1.3.2.tgz, r-oldrel (x86_64): haplo.ccs_1.3.2.tgz
Old sources: haplo.ccs archive


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