neutralitytestr: Test for a Neutral Evolutionary Model in Cancer Sequencing Data

Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 <doi:10.1038/ng.3489> and Williams et al 2017 <doi:10.1101/096305> for further details of the method.

Version: 0.0.3
Depends: R (≥ 3.4)
Imports: dplyr, ggplot2, scales, pracma, ggpmisc, cowplot
Suggests: knitr, rmarkdown, testthat
Published: 2021-02-16
DOI: 10.32614/CRAN.package.neutralitytestr
Author: Marc Williams [aut, cre]
Maintainer: Marc Williams <marcjwilliams1 at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: neutralitytestr results


Reference manual: neutralitytestr.pdf
Vignettes: neutralitytestr: Testing a neutral evolutionary model on cancer sequencing data


Package source: neutralitytestr_0.0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): neutralitytestr_0.0.3.tgz, r-oldrel (arm64): neutralitytestr_0.0.3.tgz, r-release (x86_64): neutralitytestr_0.0.3.tgz, r-oldrel (x86_64): neutralitytestr_0.0.3.tgz
Old sources: neutralitytestr archive


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